Xiaobo Yu
Dr.
Arizona State University
Summary
I started my Ph.D. research from 2003 in the department of biochemistry, Beijing Institute of Radiation Medicine, China. My research aim was to develop new detection techniques for protein microarrays. During this time, I developed a new label-free detection method for protein array based on Electrochemical Impedance Spectroscopy, which had been successfully demonstrated in the detection of protein-protein and protein-DNA interactions. From 2006 to 2007, I was working in Beijing Proteome Research Center. As the group leader of antibody array, my work was to develop new techniques for proteomics research. During this period, I developed an assembly 96-well protein array system, which had been successfully applied into the screening of antibodies, protein-protein interactions and clinical diagnostics research.
From 2008 to 2009, I obtained the Alexonder von Humboldt Fellowship (Alexander von Humboldt Foundation, Germany) and was working in Natural and Medical Sciences Institute at the University of Tuebingen. My advisor is Dr. Thomas Joos, a world leading expert and opinion leader within the field of protein microarray technologies and applications. My work was to perform the assay development of multiplexed immunoassays using Luminex bead-based array system and screen for biomarkers associated with inflammatory diseases using self-developed and commercial multiplexed cytokine and chemokine assays. During the last two years, I developed four multiplexed immunoassay panels including cytokines, chemokines and soluble receptors. As their important roles in the human immune system, the relationship between the changes of these protein levels with inflammatory diseases was investigated. In addition, I developed a new microfluidic bead-based immunoassay technique (µFBI) which can detect up to 100 different proteins with high-sensitivity using only 1 microliter sample, 1 microliter detetecion antibody and 1 microliter fluorescent molecules. This significant save the reagents and extends the applications of protein microarrays in the study of minute amount of sample materials, like tumor biopsies or tissue sections. I also have collaborations with Dr. Li-Tang Yan, associate professor in Hsinghua University. Our aim is to study drug carrier and cell membranes interactions using simulation and experimental techniques.Our results could provide valuable insights into the mechanism of drug delivery and would be very helpful for the design of new highly-efficient and safety drug carriers.
From the January of 2010, I came to Virginia G. Piper Center for Personalized Diagnostics, Biodesign Institute. My advisor is Professor Joshua LaBaer, one of the nation’s foremost investigators in the rapidly expanding field of personalized medicine, formerly director of the Harvard Institute of Proteomics. My research is to study protein functions and discovery of disease related biomarkers using high-density Nucleic Acid Programmable Protein Arrays (NAPPA) Microarrays. To date, I have got 17 publications and 2 Chinese patents. The papers were published in the journals of Clinical Chemistry, Analytical Chemistry, Proteomics, PLos One, Journal of Biomolecular Screening, ACS Nano, NanoScale, Macromolecules,and Analyst, etc
| Current Institution | Arizona State University |
| Current School | Biodesign Institute |
| Department | Virginia G.Piper Center for Personalized Diagnostics |
| Disciplines | |
| Current and Past Advisor(s) | Joshua LaBaer, Thomas Joos, Danke Xu, Yanhong Hao |
| Address | Arizona United States Phone: |
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Humboldt Research Fellow
NMI Natural and Medical Sciences Institute at the University of Tuebingen
(Oct 2007 - Dec 2009)
Research work:
1. Assay development of multiplexed immunoassays using Luminex bead-based array technology, which include cytokines, chemokines and cancer biomarkers, etc.
2. Applications of multiplexed bead-based immunoassays in clinical proteomics research.
3. Protein microarray technology
Research Scientist
State Key Laboratory of Proteomics, Beijing Proteome Research Center
(Mar 2006 - Oct 2007)
Research work:
1. Develop new techniques for proteomics research
2. High-throughput antibody screening
3. Responsible for the R&D of protein microarray associated product, e.g. the Protein Labeling Kit and Assembling 96-well Protein Array System
- Antibody biomarkers for early detection of Tuberculosis (Aug 2011 - Jul 2013)
Publication Summary
- Yu X, Magee M, LaBaer J, et al. (2012) Proteome-wide Identification of antibody biomarkers for the diagnostics of Tuberculosis using Self-assembling Protein Microarrays. In preparation.
- Yu X, Wallsrom G, Magee M, et al. (2012) Enhancing Antibody Assay for Protein Microarrays using Microarray Nonlinear Calibration. Submitted.
- Chen Q, Z Li, X Zhao, X Yu, M Vuki, W He, D Xu. (2012) A Highly-Sensitive Colorimetric Assay Method for Antibody Array Based on an Tyramide Signal Amplification System. Analytical Letters, Taylor & Francis
- Yan LandYu X.(2011) Complexes comprised of a dendrimer and a vesicle: role of vesicle size and the surface tension of the vesicle membrane. NanoScale, 3(9):3812-8.
- Yu X, Schneiderhan-Marra N. and Joos T (2011) Micropuces à protéines et médecine personnalisée. Ann Biol Clin (Paris), 69(1):17-29.
- Yu X, Hartmann M, Wang Q, Schneiderhan-Marra N, Stoll D, Poetz O, Kazmaier C and Joos T (2010) μFBI - a microfluidic bead-based immunoassay for multiplexed detection of proteins from a µl-sample volume.PLos One. 5(10): e13125.
- Yu X1, Yu Z1, Liu L1, Han H, He W, Sun Q, Gao J, Xu D (2010) High-throughput Antibody Generation using Multiplexed Immunization and Immunogen Array Analysis. Journal of Biomolecular Screening. 15: 1260-1267.
- Yu X, Schneiderhan-Marra N. and Joos T (2010) Protein microarrays for personalized medicine. Clinical Chemistry, 56(3):376-87.
- Yu X, Schneiderhan-Marra N, Hsu H, Bachmann J and Joos T. (2009) Protein microarrays- systematic tools for the inflammatory disease. Methods Mol Biol. 577,199-214.
- Yan LandYu X (2009) Charged Dendrimers on Lipid Bilayer Membranes: Insight through Dissipative Particle Dynamics Simulations. Macromolecules. 42, 6277–6283.
- Yan L andYu X (2009) Enhanced Permeability of Charged Dendrimers across Tense Lipid Bilayer Membranes. ACS Nano, 3 (8), 2171–2176.
- Yu X, Zhao T, Sun Z, Yuan H, He W, Xu D (2008) Study on a novel protein microarray detection technique based on biotin-avidin conjugation probe.Chin J Biotech, 24(3), 515-520.
- Han H, Yu X,Lv R, He W, and Xu D (2008) A novel technique for protein array based on microcontact printing method coupled with silver enhancement detection. Chinese Journal of Analysis Laboratory, 2, 107-110.
- Yu X, Xu D and Cheng Q (2006) Label-free detection methods for protein microarrays. Proteomics, 6, 5493-5503.
- Yu X,Xu D,Xu D,Lv R, and Liu Z (2006)An impedance array biosensor for label-free detection of multiple antigen-antibody binding reactions. Frontier in Bioscience,11, 983-990.
- Yu X, Lv R,Ma Z,Liu Z, Hao Y, Li Q, and Xu D(2006)An impedance array biosensor for detection of the multiple antibody-antigen interactions. Analyst, 131, 745-750. (The cover paper)
- Yu X,Hao Y, Xu D, and Li Q (2006) Applications of protein microarray in proteomics. Journal of Northeast Agricultural University, 37(2), 276-282.
- Xu D,Xu D,Yu X, Liu Z, He W and Ma Z(2005)Label-free electrochemical detection for aptamer-based array electrodes. Analytical Chemistry.77(16), 5107-5113. (One of the Most-Accessed Articles, July-September 2005)
- He W, Yang Q, Liu Z, Yu X, and Xu D (2005) DNA array biosensor based on electrochemical hybridization and detection. Analytical Letters, 38, 2567-2578.
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